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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10017389_10038457_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10017389 - 10038457
Intron Length:
21069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCCGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTTACTCAATT
Flanking Amino Acid:
CIREVNEVIQNPATITRILL
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
54.2
45
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
87.3
0.84
0.6
81.3
30.8
Minor 5ss
31.7
-2.1
3.2
42
44.8
Minor BPS
70.6
0.72
1.7
89.59
34.6

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521