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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10049033_10053541_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10049033 - 10053541
Intron Length:
4509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
GTGTGCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATC
Flanking Amino Acid:
ALIFGAARSAESKQPWRKPC
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.7
41.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.6
0.53
1
65.3
41.2
Minor 5ss
25.7
-2.8
2.9
22.2
37.3
Minor BPS
74.1
0.74
1
80.38
27.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570