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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10054066_10054222_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10054066 - 10054222
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CCGTGCTGAGCG
Flanking Amino Acid:
YADAVWGALRGLETFSQLVG
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
72.7
0.51
0.9
66.1
35.8
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
42.3
-0.7
2.1
43.53
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570