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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10056335_10056631_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10056335 - 10056631
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTGGTACGC
Flanking Amino Acid:
LGGDEVDFTCWKSNPQIRAF
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.6
0.55
1
69.6
40.7
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
39.2
-0.8
2.8
60.68
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570