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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10057733_10058031_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10057733 - 10058031
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
ATCACCTGAAAG
Flanking Amino Acid:
AYQVEPLDFTGSPEQKALVI
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
72.1
34.1
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
73.2
0.52
1
69.4
36.8
Minor 5ss
34.9
-1.7
3
44.7
43.3
Minor BPS
51.8
-0
1.7
57.21
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570