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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10058123_10058476_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10058123 - 10058476
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CTTTCCCTGACC
Flanking Amino Acid:
VDVTNLAPRLWPRAGAVAER
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
69.3
0.44
1
72.2
32.9
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
68.7
0.57
1.7
78.82
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570