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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10058582_10059065_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10058582 - 10059065
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGTC
5'SS Class:
major
3'SS Sequence:
ATTCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
CTCCGCGTAACG
Flanking Amino Acid:
RLASFRCELLRRGVQAQPLF
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
61.7
43.7
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
79.5
0.66
0.9
70
40.8
Minor 5ss
45.4
-0.5
3.5
67.5
43.9
Minor BPS
44.2
-0.5
2.4
52.05
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016289
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017016
10048798 - 10059367
10570