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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10075990_10076166_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10075990 - 10076166
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
TCCTTTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
CCTGTCTGACCT
Flanking Amino Acid:
LDPLAHPLLQWIISSNRSHI
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
59.7
44.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
71.3
0.48
1
70.8
33.8
Minor 5ss
31.2
-2.1
3.2
36.9
41.3
Minor BPS
47.4
-0.1
1.9
63.41
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016442
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017162
10073331 - 10080395
7065
ENSAPLT00000042344
10074445 - 10079026
4582
ENSAPLT00000024394
10073331 - 10079026
5696