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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10076661_10076787_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10076661 - 10076787
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
TCTCCATGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GCCATCTCCATG
Flanking Amino Acid:
AAEEVATGAEVVDLLVAMCR
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.2
42.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
69.4
0.44
0.9
61.4
39
Minor 5ss
27.5
-2.6
3.6
38.1
46.8
Minor BPS
39.6
-0.9
1.8
35.95
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016442
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024394
10073331 - 10079026
5696
ENSAPLT00000017162
10073331 - 10080395
7065
ENSAPLT00000042344
10074445 - 10079026
4582