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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10076881_10076968_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10076881 - 10076968
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTGG
5'SS Class:
major
3'SS Sequence:
GTCCCCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
GATGCCACACGT
Flanking Amino Acid:
HVFQNGSMLKPAVCTRELCV
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.1
42.2
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
71.5
0.48
0.8
65.1
30.5
Minor 5ss
36.8
-1.5
3.2
46.4
49
Minor BPS
38.5
-0.7
2.2
55.12
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016442
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024394
10073331 - 10079026
5696
ENSAPLT00000017162
10073331 - 10080395
7065
ENSAPLT00000042344
10074445 - 10079026
4582