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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10078470_10078549_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10078470 - 10078549
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCGCTCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGGGAT
U12 Branch Point Sequence:
CGCTGGGTGACG
Flanking Amino Acid:
FSLSQYLDGPEPSIEVFQPS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
72
0.5
1
68.7
37.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
34.4
-1.3
2.7
38.23
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016442
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042344
10074445 - 10079026
4582
ENSAPLT00000024394
10073331 - 10079026
5696
ENSAPLT00000017162
10073331 - 10080395
7065