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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10079302_10080392_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10079302 - 10080392
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CTGCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CCCCCCCTAACT
Flanking Amino Acid:
MDLKGQYWTDD
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
61.9
38.6
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
73.7
0.53
0.8
65.3
36.2
Minor 5ss
23.3
-3.1
3.2
25.7
39.3
Minor BPS
56.7
0.29
1.8
69.96
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016442
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017162
10073331 - 10080395
7065