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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10086422_10086629_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10086422 - 10086629
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
GATCCCTAAACC
Flanking Amino Acid:
SYEGNFCIEGRQKTPVTMSK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
63
0.39
1.7
70.29
40.4

Associated Gene:

Gene:
PKM
Ensembl Gene ID:
ENSAPLG00000001115
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001300
10086362 - 10100085
13724