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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10092544_10095651_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10092544 - 10095651
Intron Length:
3108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTCGGGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCCTTCTTACTC
Flanking Amino Acid:
PLEAVRMQHAIAREAEAAMF
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
66.3
0.37
1
57.6
38.6
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
59.1
0.27
1.6
64.76
42

Associated Gene:

Gene:
PKM
Ensembl Gene ID:
ENSAPLG00000001115
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029734
10086630 - 10100085
13456