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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10092544_10096325_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10092544 - 10096325
Intron Length:
3782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTGCTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTGAG
U12 Branch Point Sequence:
TCTTCCCGGACG
Flanking Amino Acid:
PLEAVRMQHAIAREAEAAIF
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
44.4
-0.3
1.6
36.8
42.3
Major PPT
76
0.59
0.9
70
36.5
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
52.4
-0
2
64.42
43.3

Associated Gene:

Gene:
PKM
Ensembl Gene ID:
ENSAPLG00000001115
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001300
10086362 - 10100085
13724