About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10095819_10098797_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10095819 - 10098797
Intron Length:
2979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
GATGCTTCACCT
Flanking Amino Acid:
AALIVLTESGRSAHLVSRYR
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
85.7
0.8
0.7
80.4
24.9
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
47.9
-0
1.9
65.91
44.6

Associated Gene:

Gene:
PKM
Ensembl Gene ID:
ENSAPLG00000001115
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029734
10086630 - 10100085
13456