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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10102474_10103200_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10102474 - 10103200
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCGG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTAAAT
U12 Branch Point Sequence:
CCACGCTAAATC
Flanking Amino Acid:
YANLFGKDIKVVIPVVSVQL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
55.2
49
Major BPS
52
0.05
1.3
61.2
42
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
35.7
-1.6
3.3
47.7
47.8
Minor BPS
43.8
-0.4
2
47.78
42.4

Associated Gene:

Gene:
GRAMD2A
Ensembl Gene ID:
ENSAPLG00000002217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002279
10101981 - 10107030
5050