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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10103300_10104230_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10103300 - 10104230
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGGC
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATCT
Flanking Amino Acid:
LAITTTASRKYIFVSLISRD
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
64.8
41.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
35.1
-1.7
3.6
50.2
46.4
Minor BPS
52.5
0.16
1.8
73.23
43.6

Associated Gene:

Gene:
GRAMD2A
Ensembl Gene ID:
ENSAPLG00000002217
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002279
10101981 - 10107030
5050