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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10187282_10190012_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10187282 - 10190012
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATA
5'SS Class:
major
3'SS Sequence:
GCCTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGCTACTTAACT
Flanking Amino Acid:
QPEEYHYLNQMTKKPLRQSW
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
0.9
76.9
33.7
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
76.6
0.6
0.9
72.5
37.7
Minor 5ss
30.2
-2.3
3.2
39.2
46.2
Minor BPS
75.3
0.87
1.5
86
39.7

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050