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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10187282_10194191_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10187282 - 10194191
Intron Length:
6910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATA
5'SS Class:
major
3'SS Sequence:
TTGACCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TTCTCTTTGACC
Flanking Amino Acid:
QPEEYHYLNQDCFSVEGEDL
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
0.9
76.9
33.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
65.6
0.35
1
59.5
36.8
Minor 5ss
30.2
-2.3
3.2
39.2
46.2
Minor BPS
78.4
0.88
1.1
81.39
33.4

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023888
10151711 - 10300760
149050