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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10194290_10196958_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10194290 - 10196958
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTATTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ATCTCTCTATTT
Flanking Amino Acid:
MVGFLPKTRRQIFSLLSAIL
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
54
0.1
1
59.7
32.6
Major PPT
82.3
0.73
0.7
81.5
30.3
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
49.7
0.06
1.9
70.5
41.2

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050