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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10246859_10248068_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10246859 - 10248068
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCCTCTTTAATT
Flanking Amino Acid:
GLLHLLDEESNFPQATNQTL
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.2
0.72
0.9
73.8
41.1
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
77.5
0.94
1.1
82.98
39.3

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050