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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10258628_10263019_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10258628 - 10263019
Intron Length:
4392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
ATTCCTAAACCT
Flanking Amino Acid:
GVNTINERTQRDAYAVGWNG
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
44.9
-0.3
2.1
68.5
42.4

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050