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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10263164_10263981_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10263164 - 10263981
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTAGTACA
5'SS Class:
major
3'SS Sequence:
ATTATCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CATTTATTATCT
Flanking Amino Acid:
KLLERAHGILMRNKNFKAKP
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
74.8
34.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.4
0.57
0.9
66.6
39.9
Minor 5ss
34.8
-1.7
2.5
41.4
37.3
Minor BPS
54.5
0.22
1.9
73.84
42.9

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050