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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10269788_10270922_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10269788 - 10270922
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TTGGCTGTAAAT
Flanking Amino Acid:
VKCIRSNAEKLPLRFSDSLV
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
49.2
0.02
2.2
72.41
44.8

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128