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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10284176_10284603_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10284176 - 10284603
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CTTTCCACAAAT
Flanking Amino Acid:
AAQKTLAPDGRSQRAKMRFW
Intron Amino Acid Position:
1697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
35.2
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
73.3
0.52
1
63.3
46.3
Minor 5ss
38.6
-1.3
3.1
50.7
46.2
Minor BPS
55.4
0.25
2
78.91
42.6

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050