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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10286080_10286574_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10286080 - 10286574
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
GGTTTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
CGGTGCATAACA
Flanking Amino Acid:
KSMDEFLLKKMNELDNEDSK
Intron Amino Acid Position:
1825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
77.9
0.63
0.9
69.3
41.7
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
48.8
-0
2.1
60.81
45

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050