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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10288950_10289839_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10288950 - 10289839
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAGTTTTGAATT
Flanking Amino Acid:
WIMDRASVCKLCKYACHKKC
Intron Amino Acid Position:
1980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
74.7
41.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.9
0.76
0.8
80.5
31.5
Minor 5ss
45.4
-0.5
2.9
62.4
42.2
Minor BPS
56.8
0.29
1.4
67.7
37.5

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050