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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10292847_10293198_F

Intron Information:

Intron Rank:
36
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10292847 - 10293198
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
CCCCAACGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAATG
Flanking Amino Acid:
IKELRQGLDTDIDNVNLDDY
Intron Amino Acid Position:
2065

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
53
0.07
1
46.3
34
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
62.9
0.27
1.6
66.82
41.6

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050