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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10293328_10294073_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10293328 - 10294073
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAA
U12 Branch Point Sequence:
GTGCCCGTGACA
Flanking Amino Acid:
ELYEEFLRAMGLQERKETVR
Intron Amino Acid Position:
2108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
73
38.2
Major BPS
46.3
-0.2
1.3
52.7
43.2
Major PPT
79.8
0.67
0.9
73.8
36.9
Minor 5ss
32.1
-2
3.1
34.7
41.5
Minor BPS
50.8
0.02
2.1
64.73
41.6

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024547
10151711 - 10300760
149050
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050