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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10295831_10299579_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10295831 - 10299579
Intron Length:
3749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACGC
5'SS Class:
major
3'SS Sequence:
CATTTATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GCTTGTTTGACA
Flanking Amino Acid:
SRLSLIRRSMGKGRIRRGTY
Intron Amino Acid Position:
2229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
58.6
40.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
79.5
0.66
0.9
70.4
39.9
Minor 5ss
27
-2.6
2.9
30.7
36.5
Minor BPS
57.2
0.22
1.8
66.49
40.4

Associated Gene:

Gene:
MYO9A
Ensembl Gene ID:
ENSAPLG00000002464
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023888
10151711 - 10300760
149050
ENSAPLT00000019542
10151711 - 10300760
149050
ENSAPLT00000002540
10151633 - 10300760
149128
ENSAPLT00000038843
10151711 - 10300760
149050
ENSAPLT00000024547
10151711 - 10300760
149050