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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10303774_10303846_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10303774 - 10303846
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GTCCCCCTACCC
Flanking Amino Acid:
CMKAVVLFKPETRGLKDPEQ
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
72.1
0.5
0.9
64.6
36.6
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
48.4
-0.1
2
61.67
43.3

Associated Gene:

Gene:
NR2E3
Ensembl Gene ID:
ENSAPLG00000003149
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003190
10303453 - 10305979
2527