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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10304079_10304218_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10304079 - 10304218
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
GGTCGCCCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGTTGAT
U12 Branch Point Sequence:
AGGGGGTTGATG
Flanking Amino Acid:
VFSNLPFRDQVILLEEAWSE
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
63.5
0.33
1.4
57.1
49.4
Major PPT
50.8
0.02
1.1
45.5
36.9
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
37
-1.1
2.3
36.31
40.2

Associated Gene:

Gene:
NR2E3
Ensembl Gene ID:
ENSAPLG00000003149
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003190
10303453 - 10305979
2527