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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10304916_10305225_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10304916 - 10305225
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAGC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAC
U12 Branch Point Sequence:
CCTGCGGGCACA
Flanking Amino Acid:
KRSVRRKLIYRCQAGTGLCP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.1
43.4
Major BPS
43.9
-0.3
1.4
49.9
45.3
Major PPT
78
0.63
0.7
72.3
25.7
Minor 5ss
32.9
-2
3.1
42.5
44.6
Minor BPS
31.9
-1.4
2.7
42.78
45.4

Associated Gene:

Gene:
NR2E3
Ensembl Gene ID:
ENSAPLG00000003149
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003190
10303453 - 10305979
2527