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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10314104_10314269_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10314104 - 10314269
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
CATGTCTCAAGC
Flanking Amino Acid:
TDPTQIKILKLEVLTNLANE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
46.5
-0.2
1.9
54.79
43.5

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180
ENSAPLT00000017869
10313847 - 10319847
6001
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548