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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10314333_10314561_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10314333 - 10314561
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAC
U12 Branch Point Sequence:
TGTGCCCGCACA
Flanking Amino Acid:
NISTILREFQTYIRSMDKDF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
45.1
-0.3
1.4
52.4
43.3
Major PPT
64.5
0.33
1
57.4
38.7
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
44.5
-0.4
2.2
61.87
43.8

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180
ENSAPLT00000017869
10313847 - 10319847
6001
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548