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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10314695_10314775_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10314695 - 10314775
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TCTCTGCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
TCTCTGCTCACA
Flanking Amino Acid:
GLVQLLSNRDELVVAESVVV
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
78
0.63
0.8
71.7
32.8
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
40.3
-0.7
2.5
56.54
42.9

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017869
10313847 - 10319847
6001
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180