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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10315139_10315236_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10315139 - 10315236
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGGG
5'SS Class:
major
3'SS Sequence:
CCCCTTGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGAAAA
U12 Branch Point Sequence:
CCAGCCCTGAGT
Flanking Amino Acid:
AKLYLTNSKQSKLLTQYVLN
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
58.2
46.8
Major BPS
43.7
-0.4
1.1
42.8
36.4
Major PPT
68.9
0.42
1
63.5
36.9
Minor 5ss
36.6
-1.5
3.4
49.7
46.5
Minor BPS
43.9
-0.4
2
56.02
46.4

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017869
10313847 - 10319847
6001
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180