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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10316667_10316747_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10316667 - 10316747
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGACC
5'SS Class:
major
3'SS Sequence:
GCCCCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTCCCCATCT
Flanking Amino Acid:
AVVEAKRRKAPPSSRAGPKE
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
66.9
38.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.1
0.57
0.8
68.1
32
Minor 5ss
28.6
-2.5
3
36.3
40.5
Minor BPS
44.4
-0.3
2.1
60.43
48.7

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003286
10313668 - 10319847
6180