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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10317419_10317504_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10317419 - 10317504
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CGGTCCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
TGGCCCACATCG
Flanking Amino Acid:
TLTDTSLAPALMSPAFGAVR
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
70.9
39.9
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
63.3
0.3
1
57.9
38.5
Minor 5ss
39.1
-1.2
3.3
57.1
40.8
Minor BPS
41.8
-0.7
2
47.36
44.9

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180