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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10317920_10318453_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10317920 - 10318453
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCCCCTCTGACC
Flanking Amino Acid:
DSTQAANFQLCTHTRHFYVS
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
70.3
0.46
0.9
60.9
40.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
49.5
-0
1.7
59.64
39.9

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017869
10313847 - 10319847
6001
ENSAPLT00000003286
10313668 - 10319847
6180
ENSAPLT00000035152
10309300 - 10319847
10548
ENSAPLT00000033731
10313668 - 10319847
6180
ENSAPLT00000023001
10313668 - 10319847
6180