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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10318552_10319334_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10318552 - 10319334
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGACAG
U12 Branch Point Sequence:
TGGCCGGAGACA
Flanking Amino Acid:
MSENEFRKEQGKLTGMSEIT
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
37.4
-0.7
1.5
38.4
41.7
Major PPT
68.9
0.43
0.9
61.6
34.9
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
36
-1.1
2.6
48.06
42.6

Associated Gene:

Gene:
AP3B2
Ensembl Gene ID:
ENSAPLG00000003156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035152
10309300 - 10319847
10548
ENSAPLT00000023001
10313668 - 10319847
6180
ENSAPLT00000017869
10313847 - 10319847
6001