Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10318674_10319334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10318674 - 10319334

Intron Length:

661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCCGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGACAG

U12 Branch Point Sequence:

TGGCCGGAGACA

Flanking Amino Acid:

EQEHLTRQGKGKLTGMSEIT

Intron Amino Acid Position:

658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

71.1

40.4

Major BPS

37.4

-0.7

1.5

38.4

41.7

Major PPT

68.9

0.43

0.9

61.6

34.9

Minor 5ss

32.6

-2

3.1

35.3

41.4

Minor BPS

-1.1

2.6

48.06

42.6

Associated Gene:

Gene:

AP3B2

Ensembl Gene ID:

ENSAPLG00000003156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033731

10313668 - 10319847

6180

ENSAPLT00000003286

10313668 - 10319847

6180