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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10325293_10334041_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10325293 - 10334041
Intron Length:
8749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGTGT
5'SS Class:
major
3'SS Sequence:
TCAATCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTTCTCAATC
Flanking Amino Acid:
VTKSKRDILPDFQDSEEAVA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.5
41.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
62.8
0.29
1.1
58.8
41.5
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
66.8
0.51
1.5
73.96
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003525
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003619
10325217 - 10354284
29068