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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10334231_10347563_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10334231 - 10347563
Intron Length:
13333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGCTGCGGCACT
Flanking Amino Acid:
DAAAQTSTQSVLSMLSNPLG
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.9
0.74
0.8
77.2
31.6
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
38.8
-0.8
2.7
60.99
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003525
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045659
10331317 - 10354284
22968
ENSAPLT00000003619
10325217 - 10354284
29068