Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10349348_10349621_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10349348 - 10349621

Intron Length:

274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTGTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAG

U12 Branch Point Sequence:

GGGCACTGACTT

Flanking Amino Acid:

LGGVPWDITEAGLINTFRVF

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

72.2

39.5

Major BPS

58.6

0.21

1.5

57.1

41.8

Major PPT

73.1

0.52

0.9

68.8

37.1

Minor 5ss

34.3

-1.8

2.9

44.2

Minor BPS

42.3

-0.5

1.8

53.18

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003525

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045659

10331317 - 10354284

22968

ENSAPLT00000003619

10325217 - 10354284

29068