Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10355942_10356131_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10355942 - 10356131

Intron Length:

190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCCCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGCGAG

U12 Branch Point Sequence:

GCGGCAGCGAGC

Flanking Amino Acid:

MGRVRTKTVKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

-0.8

1.4

25.2

34.1

Major PPT

64.6

0.33

0.7

61.4

21.6

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

29.6

-1.6

2.1

31.01

Associated Gene:

Gene:

RPS17

Ensembl Gene ID:

ENSAPLG00000003843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003972

10355939 - 10358616

2678