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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10356284_10356703_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10356284 - 10356703
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
CCGTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
TGTCCCCCAGGC
Flanking Amino Acid:
PSKKLRNKIAGYVTHLMKRI
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
67.8
0.4
0.9
60.5
35.4
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
40.5
-0.7
2.2
54.2
43

Associated Gene:

Gene:
RPS17
Ensembl Gene ID:
ENSAPLG00000003843
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003972
10355939 - 10358616
2678