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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10358410_10358535_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10358410 - 10358535
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
GGTGACTGACCC
Flanking Amino Acid:
PDTKEMLKLLDFGSLSNLQV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
55.9
0.15
1.2
49
38
Major PPT
84.5
0.78
0.8
76.4
37.7
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
44.2
-0.4
1.9
54.01
43.1

Associated Gene:

Gene:
RPS17
Ensembl Gene ID:
ENSAPLG00000003843
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003972
10355939 - 10358616
2678