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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10360766_10361607_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10360766 - 10361607
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTGAGGAA
5'SS Class:
major
3'SS Sequence:
TCCCCTAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TCTCCCCTAATA
Flanking Amino Acid:
PSAGSNSSSLSSEENPGSRA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
53.6
40.8
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
71.3
0.48
0.9
65.2
33.9
Minor 5ss
12.5
-4.3
3.7
19.7
38
Minor BPS
63.8
0.43
1.7
73.63
38.2

Associated Gene:

Gene:
TERB2
Ensembl Gene ID:
ENSAPLG00000017869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026738
10360021 - 10363987
3967